BtaEX6091820 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33266369-33274541:-
Coord C1 exon
chr24:33274426-33274541
Coord A exon
chr24:33270480-33270598
Coord C2 exon
chr24:33266369-33266459
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTAGAATGCTCTTTCCTCAGCAT
3' ss Score
3.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTCGGTGTGAATGCCAGCACAATACTTGCGGGGACACGTGTGATCGCTGTTGCATGGGGTACAATCAGAGGCGCTGGCGGCCTGCCACGGGGAAGCAGAGCAATGAGTGTGAAG
Seq A exon
CATGCAACTGCCATGGACACTCCACCGACTGTTACTATGATCCGGATGTTGAGAGGCAGCAGGCAAGCTTGAATATCCAAGGCCTCTATGCAGGTGGAGGGGTCTGCATTAACTGTCAG
Seq C2 exon
CATAACACAGCCGGTGTAAACTGTGAGAAGTGTGCTAAGGGCTATTACCGCCCTTATGGCATTCCGGTCCATGCCCCCGATGGCTGCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(55.9=95.0)
C2:
PF0005319=Laminin_EGF=PD(41.2=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGGTGTGAATGCCAGCAC
R:
GAATGCAGCCATCGGGGG
Band lengths:
206-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]