RnoEX0002302 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3766556-3773842:+
Coord C1 exon
chr18:3766556-3766671
Coord A exon
chr18:3768830-3768948
Coord C2 exon
chr18:3773752-3773842
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCAAGAGTGCTTTGTTCCAGCCT
3' ss Score
1.57
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTCCGATGCAAATGCCAGCACCATACCTGTGGGGACACGTGTAATCGCTGCTGTGCAGGCTACAATCAGAGGCCCTGGCGGCCCGCTGCTCAGGACCAGCACAATGAGTGTGAAG
Seq A exon
CCTGCAACTGCCATGGGCACGCCGTGGACTGTTACTATGACGAGGCTGTGTCGCGTCAGCAGGCGAGCTTAAACAGCAAAGGTGTCTACACAGGCGGAGGGGTCTGCATTGACTGCCAG
Seq C2 exon
CACAACACTGCGGGTGTGAACTGTGAAAAGTGTGCGAAGGGTTACTTCCGGCCCCATGGAGTTCCGGTGGAAGCACTGCACGGATGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(67.3=92.5)
A:
PF0005319=Laminin_EGF=PU(55.9=95.0)
C2:
PF0005319=Laminin_EGF=PD(41.2=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGATGCAAATGCCAGC
R:
CATCCGTGCAGTGCTTCCAC
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]