GgaEX1032806 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102803193-102812466:+
Coord C1 exon
chr2:102803193-102803308
Coord A exon
chr2:102808814-102808932
Coord C2 exon
chr2:102812376-102812466
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGGAGTATTGCTTTTCCAGCCT
3' ss Score
3.01
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTCATTGTGAATGCCAGCATAACACTTGTGGGGAAACCTGTGACCGCTGCTGCCCTGGATATAATCAGAAACAGTGGCAACCTGCGACAGCTGGGAACATAAATATATGTGAAC
Seq A exon
CCTGCAATTGCCATGGACATGCCACTGACTGCTACTATGATGCTGATGTTGATCAGCGTCGAGAAAGCCTAAATATTCATGGGCATTATGAAGGTGGAGGAGTCTGCATTAACTGCCAG
Seq C2 exon
CATAATACAGCTGGTGTTAACTGTGAGAAGTGTGCAAAAGGTTACTATCGTCCTTATGGTGTTCCAGCAAGAGCTCCTGATGGCTGTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCATTGTGAATGCCAGCA
R:
CAGCCATCAGGAGCTCTTGC
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]