BtaEX6091822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33262907-33266459:-
Coord C1 exon
chr24:33266369-33266459
Coord A exon
chr24:33263943-33264074
Coord C2 exon
chr24:33262907-33262972
Length
132 bp
Sequences
Splice sites
3' ss Seq
GAAACTGGGGTTTCTCTTAGCCT
3' ss Score
2.19
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CATAACACAGCCGGTGTAAACTGTGAGAAGTGTGCTAAGGGCTATTACCGCCCTTATGGCATTCCGGTCCATGCCCCCGATGGCTGCATTC
Seq A exon
CCTGCAGCTGCCACCCGGAGCATGCGGAGGACTGTGAGCAGGGCTCCGGCCGCTGCACCTGCAGGCCCAACTTCCGCGGAGACCACTGTGAGGAGTGTGCGGCCGGCTACTATCATTTCCCAGTTTGCTCCA
Seq C2 exon
GAATTCCCATCCTTCCTATTTCTACTCCAAGTCCAGAGGATCCAGTAGCTGGAGATATAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(41.2=90.3)
A:
PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCGGTGTAAACTGTGA
R:
TGGATCCTCTGGACTTGGAGT
Band lengths:
130-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]