MmuEX6000337 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12419166-12421199:+
Coord C1 exon
chr18:12419166-12419256
Coord A exon
chr18:12419797-12419928
Coord C2 exon
chr18:12421137-12421199
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTGTTTCCTCTTAGCTT
3' ss Score
7.69
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CACAACACTGCAGGCGTGAACTGTGAAAAGTGTGCGAAGGGTTACTTCCGGCCCCATGGAGTTCCGGTGGATGCACTGCATGGATGCATCC
Seq A exon
CTTGCAGCTGTGACCCAGAACGCGCAGATGACTGTGACCAGGGCTCAGGCCACTGCCATTGTAAGCCAAATTTCTCCGGAGACTACTGTGAGACGTGTGCAGATGGGTACTATAATTTTCCATTTTGCTTGA
Seq C2 exon
GAATTCCAGTCTTTCCCAACTACACTCCAAGTCCAGAAGATCCAGTGGCTGGCAATATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'12-19,'12-10,14-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(41.2=90.3)
A:
PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGCAGGCGTGAACTG
R:
AGCCACTGGATCTTCTGGACT
Band lengths:
138-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types