RnoEX6058096 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3773752-3776034:+
Coord C1 exon
chr18:3773752-3773842
Coord A exon
chr18:3774373-3774504
Coord C2 exon
chr18:3775972-3776034
Length
132 bp
Sequences
Splice sites
3' ss Seq
GGTGATGTCTTTCCTCTTAGCTT
3' ss Score
5.98
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CACAACACTGCGGGTGTGAACTGTGAAAAGTGTGCGAAGGGTTACTTCCGGCCCCATGGAGTTCCGGTGGAAGCACTGCACGGATGCATCC
Seq A exon
CTTGCAGCTGTGACCCTGACCGTGCAGATGAATGTGACCAGGGCTCAGGCCGCTGTCATTGTAAGCCAAACTTCTCTGGAGACTTCTGCGAGACGTGTGCAGACGGATACTATAATTTCCCATTTTGCCTGA
Seq C2 exon
GAATTCCAGTCTTTCCTGACTACACTCTGAATCCAGAAGATCCCATGGCTGGCAATATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(41.2=90.3)
A:
PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGGGTGTGAACTGTG
R:
CCAGCCATGGGATCTTCTGGA
Band lengths:
138-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]