BtaEX6091857 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33122593-33124490:-
Coord C1 exon
chr24:33124374-33124490
Coord A exon
chr24:33122980-33123134
Coord C2 exon
chr24:33122593-33122734
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTTGGAAAATACAGGAA
3' ss Score
1.18
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AGACAAGTTAAGGAAATGAATTCCCTCCAGAGTGACTTCACCAAGCGTCTAGCCACGGCAGATTCTTCCTTGATGCAAACTAATATTGTCCTGCAATTGATGAAGAAAAGCCATGAG
Seq A exon
GAATATGAAAAATTAGCTGTCACTTTAAATGAAGCAAGACATGAACTAAGTGACAAAGTGAGAGAACTTTCCAGATCGGCCAGCAGAGCATCTCTGGTGGAGGAGGCAGAGAGGCACTCACAGTCCCTACAGGAGCTGGCCAAGCAGCTAGAGGA
Seq C2 exon
GATCAAGAGGAACGCCAGTGGGGATGAGCTGGTGCGCTGTGCTGTGGACGCTGCCACTGCCTACGAGAACATCCTCAACGCCATCAAAGCGGCCGAGGATGCAGCCGACAAGGCCACCACTGCATCTGAGGCTGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'55-59,'55-58,56-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.692 C2=0.104
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PD(13.9=94.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCCCTCCAGAGTGACT
R:
CTGGAGAGCAGCCTCAGATG
Band lengths:
243-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]