MmuEX0026045 @ mm9
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12686058-12687363:+
Coord C1 exon
chr18:12686058-12686174
Coord A exon
chr18:12686804-12686958
Coord C2 exon
chr18:12687222-12687363
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTGTAAAAAAATAGGAA
3' ss Score
2.95
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGACAAATGAAAGAAATGGATTCCCTGAAGAATGACTTCACCAAGTACCTGGCCACAGCCGACTCTTCCCTGCTGCAGACCAACAATCTACTGCAGCAGATGGACAAAAGCCAGAAG
Seq A exon
GAATATGAAAGCTTAGCTGCTGCTTTAAATGGAGCAAGACAGGAACTGAGTGACAGAGTGCGAGAACTGTCCAGATCGGGTGGCAAAGCACCGCTGGTGGTGGAGGCAGAGAAGCATGCACAGTCTTTACAGGAGCTGGCAAAGCAGCTGGAAGA
Seq C2 exon
GATAAAGAGAAACACCAGCGGGGATGAGCTGGTGCGTTGTGCTGTGGATGCTGCCACGGCCTATGAGAACATCCTCAATGCCATCAGAGCAGCAGAGGATGCAGCCAGCAAGGCCACCAGTGCCTCCAAGTCTGCCTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'52-55,'52-54,53-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.519 C2=0.062
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PD(13.9=94.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGATTCCCTGAAGAATGACT
R:
GAAGGCAGACTTGGAGGCAC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: