GgaEX6021350 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102872851-102874883:+
Coord C1 exon
chr2:102872851-102872967
Coord A exon
chr2:102873503-102873657
Coord C2 exon
chr2:102874742-102874883
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTATAAACCTGCAGGAA
3' ss Score
9.23
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
AAACAAATTGATGAGACAAACGCACAGCAGAACAGCATCTTGGATATTTTGAGCTCTGCCCAGTCTTCCCTGACGCAAGCTAACAGTATGCTTGGATTACTGCAGAAGAGCAAAGAG
Seq A exon
GAATATGAAAGCCTGTCTGCTCAGCTTGATGGAGCAAGGAAGGATATGAATGGGAAGCTCACAAATAGCTCCTTATCAGCAAGCAAAGAACCTTTGGTGGTGAGGGCTGAGGAACATGCCAAATCTTTGCAAGACTTGGCAAAACAACTGGAAGA
Seq C2 exon
AATAAAGAACAATGCTAGGAAGGATGAGCTGGTAGGCTGTGCTGTGGAAGCTTCTACTGCCTATGACAATATTATTAATGCCATCAAAGCTGCAGAGGAAGCAGCCAACAAAGCTGGGAGTGCAGCTGACTCAGCTTTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'58-69,'58-68,60-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.788 C2=0.167
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PD(13.9=94.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGACAAACGCACAGCA
R:
CTGAGTCAGCTGCACTCCCAG
Band lengths:
243-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]