BtaEX6093442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046911 | SCN10A
Description
sodium channel, voltage gated, type X alpha subunit [Source:HGNC Symbol;Acc:HGNC:10582]
Coordinates
chr22:12227627-12234035:-
Coord C1 exon
chr22:12233766-12234035
Coord A exon
chr22:12231991-12232109
Coord C2 exon
chr22:12227627-12227707
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTGTTGTGTTTTGTTTTAGACA
3' ss Score
10.52
5' ss Seq
CTCATATCC
5' ss Score
-13.36
Exon sequences
Seq C1 exon
ATGGAATTCCCCTTTGGGTCCCTGGAAACTACCAACTTCCGTCGATTCACCCCAGAGTCCCTGCTGGAGATTGAAAAAAGAATTGCTGCTAAGCAAAAGACAAAGAAACCCAAAGAGAAGTTCAGGAAGCGGAAGGACCAGAAAGAGAAGTCTCGGCCCCAGCTAGACTTGAAAGCCTGCAACCAGTTGCCCAAGTTCTATGGTACGCTCCCGCCTAAGCTGATTGGGGAGCCGCTGGAGGATCTGGACCCCTTCTACAGCACACACCGG
Seq A exon
ACATTTATGGTGCTGAACAAAGGGAGGACCATTTCCCGGTTTAGCGCCACTCGGGCCCTGTGGTTATTCAGTCCTTTCAACCCGATCAGAAGAATAGCCATCAAAGTGTCCGTCCACTC
Seq C2 exon
GTGGTTCAGTTTATTTATAACCATCACTATTTTGGTCAATTGTGTGGGCATGACCCGAACAGAACTTCCGGAGAGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046911-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGAGAAGTTCAGGAAGC
R:
TCCATTCTCTCCGGAAGTTCTGT
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]