MmuEX6069787 @ mm9
Exon Skipping
Gene
ENSMUSG00000034533 | Scn10a
Description
sodium channel, voltage-gated, type X, alpha [Source:MGI Symbol;Acc:MGI:108029]
Coordinates
chr9:119596998-119603478:-
Coord C1 exon
chr9:119603174-119603478
Coord A exon
chr9:119600562-119600680
Coord C2 exon
chr9:119596998-119597078
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGCTTTGTTCTAGACA
3' ss Score
10.18
5' ss Seq
CTCGTATCC
5' ss Score
-5.17
Exon sequences
Seq C1 exon
AAGAGTGTAAATCCTTCCCCAAGAAGAATGAGAAGATGGAGTTCCCCTTTGGGTCCGTGGGAACTACCAACTTCAGACGGTTCACTCCAGAGTCGCTGGCAGAGATCGAGAAGCAGATCGCTGCCCACCGCGCCGCCAAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAGGCCTCAGTTGGACTTGAAGGCCTGTAACCAGCTGCCCAGGTTCTATGGCGAGCTCCCAGCAGAGCTGGTCGGGGAGCCCCTGGAGGACCTGGATCCTTTCTACAGCACACACCGG
Seq A exon
ACATTCATAGTGTTGGATAAAAGCAGGACCATTTCCAGATTCAGTGCCACTTGGGCTCTGTGGCTCTTCAGTCCCTTCAACCTGATCAGAAGAACAGCCATCAAAGTGTCCGTCCACTC
Seq C2 exon
CTGGTTCTCCATATTTATCACTGTCACTATTTTGGTCAACTGTGTGTGCATGACCCGAACTGATCTTCCAGAGAAACTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034533-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCGAGAAGCAGATCGC
R:
TCATGCACACACAGTTGACCA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: