BtaEX6093616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15379991-15381999:+
Coord C1 exon
chr22:15379991-15380065
Coord A exon
chr22:15380621-15380728
Coord C2 exon
chr22:15381955-15381999
Length
108 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTTTTTTTTTCCAGGAG
3' ss Score
10.36
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTGGTCGAATTATGTTTCAGCTCTTTTCAGATATATGTCCAAAAACATGCAAAAACTTCCTTTGCCTATGCTCAG
Seq A exon
GAGAGAAAGGCCTTGGGAAAACAACTGGAAAGAAGTTATGTTATAAAGGTTCTACATTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(26.6=100),PF132061=VSG_B=PU(19.7=46.2)
A:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCGAATTATGTTTCAGCTCT
R:
AATAACCACCATAAATTGATTCTCCA
Band lengths:
114-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]