HsaEX0043061 @ hg19
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer-tumor recognition sequence [Source:HGNC Symbol;Acc:7833]
Coordinates
chr3:42659062-42661200:+
Coord C1 exon
chr3:42659062-42659136
Coord A exon
chr3:42660512-42660619
Coord C2 exon
chr3:42661156-42661200
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTCCAGGAG
3' ss Score
12.13
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTGGTCGCATTATGTTTCAGCTCTTCTCAGACATATGTCCAAAAACATGCAAAAACTTCCTTTGCTTGTGCTCAG
Seq A exon
GAGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACGTTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(26.6=100),PF132061=VSG_B=PU(19.7=46.2)
A:
PF0016016=Pro_isomerase=FE(27.3=100),PF132061=VSG_B=PD(68.3=75.7)
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGCATTATGTTTCAGCTCT
R:
TCCACCATAAATTGATTCTCCACCT
Band lengths:
109-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)