DreEX0050762 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20507776-20511586:-
Coord C1 exon
chr24:20511512-20511586
Coord A exon
chr24:20507922-20508029
Coord C2 exon
chr24:20507776-20507820
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGGGTTTCTTGCAGGCG
3' ss Score
9.83
5' ss Seq
AGGGTATGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
TTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTG
Seq A exon
GCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGG
Seq C2 exon
GCAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(26.6=100),PF132061=VSG_B=PU(27.3=46.2)
A:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=PD(70.5=83.8)
C2:
PF0016016=Pro_isomerase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATTGTCTTTCAACTGTTCTCCG
R:
AACCACCAAATATAGATTCTCCCCC
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]