BtaEX6093679 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16476706-16477733:+
Coord C1 exon
chr22:16476706-16476868
Coord A exon
chr22:16477234-16477325
Coord C2 exon
chr22:16477607-16477733
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTCCTCCTTCTTCAGATT
3' ss Score
11.01
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCCAGCCTTTGTCCAGGACCAGGACACTCTCCAGGAGGGTCTGAGTACTCCAGGAATAGCACTTCCTCATGCACCCACTGGCAGCCACATATCAGCTGAAATTCGCTCAAATTCTCTTACTGACCCAGTGGTGTTTGGCTTGCTCCAGGATCCTCAACATG
Seq A exon
ATTCTCCTGCCCCTGAAGCTTCTGCCCTTTCCCAGGAAGAGAACCCCAGAAACCAATTAATGGCTCTCATGCTCTTGACAGCCCAGCCCCAG
Seq C2 exon
GAATTGGTGATGTTTGAGGAGGTATCAGTATGCTTCACTTCAGAAGAATGGGCATGTTTGAGCCCAGTTCAGAGGGCCTTGTACTGGGATGTTATGCTGGAGAATTATGGAAATGTGACTTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037803-'4-6,'4-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.516 C2=0.023
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGGCAGCCACATATCAG
R:
AACATCCCAGTACAAGGCCCT
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]