HsaEX0073163 @ hg19
Exon Skipping
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:12988]
Coordinates
chr3:44672554-44674091:+
Coord C1 exon
chr3:44672554-44672713
Coord A exon
chr3:44673597-44673688
Coord C2 exon
chr3:44673965-44674091
Length
92 bp
Sequences
Splice sites
3' ss Seq
AGCTTTTTCTCCCTCCTCAGATT
3' ss Score
10.21
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCCAGTCCTTGTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCCAGGAACAACACTTCCTCCTGTACTTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCTCCTACTGACCTAGTGGCATTCAACCTCCAGGATCCTCAGCATG
Seq A exon
ATTCTCCTGCCCCTGAAGCTTCTGCCCTTTCCCAGGAAGAGAACCCAAGAAATCAATTAATGGCACTTATGCTCCTAACAGCCCAGCCCCAG
Seq C2 exon
GAGTTGGTGATGTTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGCATGTCTGGGCCCAATCCAGAGGGCCTTGTACTGGGATGTGATGCTGGAGAATTATGGAAATGTGACCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.581 C2=0.023
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAAATTTGCCCGCATC
R:
TCTCCAGCATCACATCCCAGT
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)