HsaEX0073163 @ hg38
Exon Skipping
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:HGNC:12988]
Coordinates
chr3:44631062-44632599:+
Coord C1 exon
chr3:44631062-44631221
Coord A exon
chr3:44632186-44632196
Coord C2 exon
chr3:44632473-44632599
Length
11 bp
Sequences
Splice sites
3' ss Seq
GGCACTTATGCTCCTAACAGCCC
3' ss Score
5.49
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCCAGTCCTTGTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCCAGGAACAACACTTCCTCCTGTACTTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCTCCTACTGACCTAGTGGCATTCAACCTCCAGGATCCTCAGCATG
Seq A exon
CCCAGCCCCAG
Seq C2 exon
GAGTTGGTGATGTTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGCATGTCTGGGCCCAATCCAGAGGGCCTTGTACTGGGATGTGATGCTGGAGAATTATGGAAATGTGACCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448-'12-19,'12-18,13-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.581 C2=0.023
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAGGATCCTCAGCATG
R:
CCAGTACAAGGCCCTCTGGAT
Band lengths:
108-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development