BtaEX6093946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21790134-21793665:-
Coord C1 exon
chr22:21793471-21793665
Coord A exon
chr22:21790919-21791170
Coord C2 exon
chr22:21790134-21790275
Length
252 bp
Sequences
Splice sites
3' ss Seq
TGCAACTTTCCTTTTCTCAGGTA
3' ss Score
9.57
5' ss Seq
TGAGTGAGC
5' ss Score
3.38
Exon sequences
Seq C1 exon
GTTGGTGCTCTCCCGTTTTGAATTTGAAGGCGTTTCTACCGGAGAGAACGCTCTGGAGGCAGGCGAGGATGAGGAAGAAGTATGGCTCTTCTGGAGGGACAGCAACAAGGAGGTTCGCAGTAAGAGTGTCCGGGAGCTGGCGCAGGATGCCAAGGAGGGCCAGAAGGAAGACCGCGACGTCCTTGGCTACTACAG
Seq A exon
GTACCAGCTGAACCTCTTTGCGAGGATGTGCCTGGACCGCCAGTACCTTGCCATCAACGAGATCTCGGGCCAACTGGACGTGGATCTCATTCTCCGCTGCATGTCCGACGAGAACCTGCCCTACGACCTGCGGGCATCCTTCTGCCGTCTCATGCTCCACATGCACGTGGACCGAGACCCCCAGGAGCAGGTCACCCCCGTGAAATACGCCCGCCTCTGGTCTGAGATCCCCTCCGAGATCGCCATTGATGA
Seq C2 exon
CTACGATAGTAGTGGAACCTCCAAAGATGAAATTAAGGAGAGGTTCGCTCAGACCATGGAATTTGTGGAGGAATATTTAAGAGATGTGGTGTGTCAGAGGTTCCCTTTCTCTGATAAGGAGAAAAATAAGCTTACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGCTCTCCCGTTTTGA
R:
GGAACCTCTGACACACCACAT
Band lengths:
299-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]