Special

GgaEX6010808 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18440015-18443809:+
Coord C1 exon
chr12:18440015-18440209
Coord A exon
chr12:18442073-18442324
Coord C2 exon
chr12:18443668-18443809
Length
252 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCCCTCTGTCCAAAGATA
3' ss Score
9.47
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GCTGGTCCTCTCTCGATTTGAATTTGAAGAAGTGTCAAGTGGAGAAAATGCCTTGGAAGTTGGAGAAGATGAGGAAGAAGTGTGGCTATTCTGGAGAGACAGTAACAAGGAAATCCGCAGTAAGAGTATCAGAGAGTTGGCTCAGGATGCTAAGGAAGGGCAGAAGGAAGATCGGGACGTACTCAGCTATTACAG
Seq A exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
Seq C2 exon
CTATGATAGCAGCGGAACTTCCAAAGATGAAATTAAAGAGAGATTTGCGCAAACGATGGAGTTTGTAGAGGAGTATTTAAGAGATGTGGTGTGTCAGAGATTCCCTTTCTCTGATAAAGAGAAGAATAAGCTCACTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'24-30,'24-28,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTCCTCTCTCGATTTGA
R:
AGGGAATCTCTGACACACCACA
Band lengths:
301-553
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]