BtaEX6094423 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44337493-44346052:+
Coord C1 exon
chr22:44337493-44337685
Coord A exon
chr22:44339818-44340010
Coord C2 exon
chr22:44345880-44346052
Length
193 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTTATCTTTTTAGACC
3' ss Score
8.32
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGCATTGATTGCATCAGACTTGGTGAGGTCATTATTGAGTATTCCTTTGATTTCAAGTTTTATATCACCACAAAGTTGAGAAATCCACATTATATGCCAGAGCTGGCTACAAAGGTATCTTTGCTCAATTTCATGATAACTCCAGAAGGACTTGAAGATCAATTACTTGGTATTGTTGTTGCAAAGGAGAG
Seq A exon
ACCAGAGTTAGAAGAGGAACGAAATGCTCTTATTCTTCAGTCTGCAGCTAATAAGAAACAGCTGAAAGATATAGAGAAAAAAATTTTAGAAACATTATCATCTTCAGAAGGAAACATTTTAGAAGATGAAAGTGCGATTAAAATCTTGGACTCTGCTAAATTGATGTCCAATGAGATAACCAAGAAACAACAG
Seq C2 exon
ATTGCAGAAAAAACAGAACTCAAAATAGCAGAGTCTCGAGAAGGTTATAGACCTATTGCTAAACATTCATCAGTGTTATTCTTTAGCATTGCAGACCTGGCTAACATCGATCCCATGTACCAGTACTCTCTCATCTGGTTTGTGAACCTTTATATCAACTCTATTCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'61-62,'61-61,62-62=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.7=100)
A:
PF127812=AAA_9=PD(26.0=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACAAAGTTGAGAAATCCACA
R:
TGGGATCGATGTTAGCCAGGT
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]