GgaEX6010301 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8898421-8900734:-
Coord C1 exon
chr12:8900542-8900734
Coord A exon
chr12:8899492-8899684
Coord C2 exon
chr12:8898421-8898593
Length
193 bp
Sequences
Splice sites
3' ss Seq
CGTGTATTTTTCTTTCTAAGACC
3' ss Score
7.18
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAGGCATGGATTGTATCAGGCTTGGTGAGGCGGTTATTGAGTATTCCAGTGATTTCAAGTTTTTTATTACCACAAAACTGAGAAATCCACATTATATGCCTGAACTCGCTACAAAAGTTTCTTTACTCAATTTTATGATAACACCAGAGGGACTTGAAGACCAATTGCTAGGTATTGTTGTAGCAAAAGAGAG
Seq A exon
ACCAGAATTGGAAGATGAAAGAAATGCTCTCATCCTTCAGTCTGCAGCCAATAAAAAAAATCTAAAAGAAATTGAGAAGAAAATTCTAGAAACCCTACAGTCATCTGAAGGGAATATTCTGGAAGATGAGACAGCAATCACAATCTTGGATTCTGCTAAAATAATGGCTAATGAAATCACAAAAAAACAACAG
Seq C2 exon
ATTGCAGAGAAAACAGAACTGAAAATAGCTCAGTCTCGAGAAGGCTATCGACCTATTGCAAAGCATTCCTCCGTGCTGTTCTTCAGCATTGCAGACTTGGCAAACATTGACCCCATGTACCAGTACTCCCTTAGCTGGTTTGTTAATCTCTTCATCAACTCTATTCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'58-62,'58-61,59-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.7=100)
A:
PF127812=AAA_9=PD(26.0=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGTGAGGCGGTTATTGA
R:
AAGAACAGCACGGAGGAATGC
Band lengths:
257-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]