BtaEX6094887 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49114801-49118359:-
Coord C1 exon
chr22:49118024-49118359
Coord A exon
chr22:49117152-49117224
Coord C2 exon
chr22:49114801-49114975
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGGGTTTGGTTTCAGGAA
3' ss Score
7.23
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGAGCAACCTAACAGAAAAGGCCACAGCCCAGGAAGGGCCTCTCAGGGCCAAGAGTGCAGATGGACCTCTGCGGGCCCTGAGTGTAATCTGAAAGACCTGGAGCGTGACCCGGGGAGGATTCTTCAGGGACCAGATTCTGGGTCACAGAAACTTCCTCCAAGCCCTGACCCTAAGACCCCACCTTTACCTCTGTCCGTGACCCCACCCATGCCCTCAGACTTGGGGCAGCCCCGGAAGTTGCCCCTGACAGGCTCTGACAAGAAGTACCCCCTGATGAAGCAGCGCGGATTCTACTCTGACATCCTCAGCCCCGGAAGCTTGGATAAACTTGGG
Seq A exon
GAAGTGTGCCATGGCCCCTGCACAAACCTGGACCTCCTGTGGCAGGCCAACCTTGACAAGTTCACCCCAGAAG
Seq C2 exon
TCAGAACCTTTGAGGTTTCTGAGGACTTCGAGGAGCGCCTGGAGCGCGAGCGCATCGGGTCCACCACCAAGCTGCTCACCCAGACTGACTTCCCGCTGCAGGCCTACGAGCCCAAAGTACAGGTGCCCTACATGGTGCTGCCGGGCCAGTGCCCCCGCAAGATTGAGATCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.000 C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCAGCGCGGATTCTA
R:
CTGTACTTTGGGCTCGTAGGC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]