RnoEX6054751 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7399871-7403136:-
Coord C1 exon
chr16:7402815-7403136
Coord A exon
chr16:7401687-7401759
Coord C2 exon
chr16:7399871-7400045
Length
73 bp
Sequences
Splice sites
3' ss Seq
GGTTCTGGGCTTTGTTTCAGGAT
3' ss Score
7.65
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCTCTGGCTCGGACAAGTCTCTGAAGAACGGCATGGAGGAGTGTGATAAAGAAGAAGCGAGCACTAGCTCTCAGGGCCCAGGATACTGTCCAGCGAACGTTCCTGAAAATCATGACCTGGAGAAGATGTTAAAAGAATCAAGCCGTAATCCAGAAAAGACTTCCCCAAATCCCGAACTCAAGACCCCACCTTTACCCCTCTCAGACTTAGGGCAGCCCAGGAAGTCGCCTTTGGCAGGCACCGATAAGAAGTACCCCATCATGAAGCAGCGTGGATTCTATTCCGACATCCTCAGCCCTGGAACCTTAGACCAGCTTGGG
Seq A exon
GATGTGTGCTGTGGGCCCTACCTGTCCCAGAATTTGATTCGTCAAGCCGACCTCGACAAGTTCACCCCAAAAG
Seq C2 exon
CTGAATCGTTCGTCATTCCTGAGGACTTTCAGGAGCGTGTAGAGCAGCAGAGCATCGGGACTACCACGCGGCTGCTCACCCAGACTGACTTCCCTCTACAGTCCTATGAGCCCAAGGTGCAGGTCCCATTCCAGGTGCTGCCCGGACGTTGCCCTCGGAAGATTGAGATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.037 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCCACCTTTACCCCTC
R:
CACGCTCCTGAAAGTCCTCAG
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]