GgaEX1020125 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3037366-3040643:+
Coord C1 exon
chr12:3037366-3037618
Coord A exon
chr12:3038075-3038147
Coord C2 exon
chr12:3040469-3040643
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCACTGCATTTCAGGAT
3' ss Score
9.81
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAGCCCAGGATTGCATTGCAGTGTCATTCTCCTAAGAAGATGGATGAAGGAAACAAGGATTTGATGAATTCTCTGGGCAGGAGCCCCAACCCTCCCAGCACCAGCCGTGAGGCTTCATGCCAGAACCACAGACCAGGAAGGCGTTTGTTGCTTCCTGATAGCTGCAACCAGGGGGCAACAAAATACTCAGCCATTAGACGAAAGGCTTATTATCCCGGTGTCCTCACTCCAGAAGCCTCCAGCATCTCAGAG
Seq A exon
GATGTCTGTGCTGCACCCCGTACATACCTTTCTTTGCTAAACCAGGCAGACCTCGAACAGCACACCCCCAAAG
Seq C2 exon
TCACCACTTTCAAGATGCCTGAGAATCCTGCGAGTGTCCTGGATGCACAAGTGATTGGACCAACCACTGAGCACCTCATCGAGTCAGACTTCCCTGAGCAGTCCTTTAAGCCCAAAGTGCAGATTGCCTTCCAAACACTCCCAGGGCAGTGCCCTCGGAGTATCGAAATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.360 C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATGCCAGAACCACAGA
R:
AGGACACTCGCAGGATTCTCA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]