BtaEX6095962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038616 | PRSS46
Description
protease, serine, 46 [Source:HGNC Symbol;Acc:HGNC:37325]
Coordinates
chr22:53317681-53319211:+
Coord C1 exon
chr22:53317681-53317858
Coord A exon
chr22:53318039-53318295
Coord C2 exon
chr22:53319048-53319211
Length
257 bp
Sequences
Splice sites
3' ss Seq
TCCTACCCGTGACCCTGCAGATC
3' ss Score
9.56
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GGTCCTGGTTCCGGGCTTGTGGTCAGACTAACATCTCCTGCAAGAATGTGAACGGAAAGCTAGTGGAGGTAGGCAAGTGGCCATGGCAGGTGAGCATCCTATTCCTGGGCATGAGCATCTGCAGTGGCTCCCTCATCCACCGCCAGTGGGTCCTTACAGCTGCACACTGCTTACAGAG
Seq A exon
ATCCAAGGACCCCTTGTCATACTCCGTGAAGATGGGAGTTCAGAGCCTCTTGGAAAATGGTACCGAACGTCAAGTTGCTCGCATCACGATTCATGAGGATTTCACTAACCTATCCCAGGATCTTGCCCTCCTGAAGCTCAGGGACTCTGTCTCCTGGTCCCCACTCATCCAGCCTGTCTGTCTACCTAACCCCAAACTCAAGCCATCTTTTGGATCCCTGTGCTGGATGATCGGGTGGGGAAAAGTGGATATTCACG
Seq C2 exon
CGAACCCACAGTCCCCCTACAGCCTTCAGGAGGTGGCTGTCAAGATCATAAATAATGATATCTGCAATCAACAGTACAAGTTCCTCTTCTTGACAAACCAGAAGAAGTTACTTGGGAATGACATGATTTGTGCCACCTCTCATTTGGGCATGGACACCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038616-'5-2,'5-1,6-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=73.3)
A:
PF0008921=Trypsin=FE(37.2=100)
C2:
PF0008921=Trypsin=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGAAAGCTAGTGGAGG
R:
GACAGGTGTCCATGCCCAAAT
Band lengths:
293-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]