RnoEX0070371 @ rn6
Exon Skipping
Gene
ENSRNOG00000020981 | Prss46
Description
protease, serine, 46 [Source:RGD Symbol;Acc:1302970]
Coordinates
chr8:119126274-119128201:+
Coord C1 exon
chr8:119126274-119126451
Coord A exon
chr8:119126665-119126927
Coord C2 exon
chr8:119128038-119128201
Length
263 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTCTGGGCCTGCAGATC
3' ss Score
9.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCCCTGGTTCTGGTCCTGTGGTCAGACCAACATATCCTGCAAGGTGGTCAACGGGAAGGTGGTGGAGGTGGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGGTCCTCACAGCCGCACACTGCTTACAAAG
Seq A exon
ATCTAAGAACCCGGCTAACTACACCGTGAAGGTGGGAGTCCAGACCCTCCCAGACAACAGCTCCTCAGAGCTCCTGGTCACTAGCATCGTGATTCACGAGAACTTCATCAATCACATGTCCCATGACATCGCCATCCTGAAGCTCAAGTATCCTGTCACCTGGTCCCCCTTCATCCAGCCAATCTGTCTCCCCGAAGTCAATTTCAAGCCAAGCATTGGCACCATGTGCTGGGTCATCGGCTGGGGACTCGAAAAGGCCAAAG
Seq C2 exon
GGGCCCCAAAGACTCCCTATAGTGTCCAGGGCGTGGCTGTCAGGATTGTGAACAACGAAATCTGCAATCATCGATACCAGTTCCTCCTGCTGAAGAACCAGAAGAAGTTCATTGGGAACGACATGTTATGTACAAGCCCAGAATGGGGCCTGGATACTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020981-'4-3,'4-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.9=73.3)
A:
PF0008921=Trypsin=FE(37.8=100)
C2:
PF0008921=Trypsin=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGCAAGGTGGTCAACG
R:
TGACAAGTATCCAGGCCCCAT
Band lengths:
308-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]