BtaEX6096713 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHG5]
Coordinates
chr23:4165177-4169534:+
Coord C1 exon
chr23:4165177-4165248
Coord A exon
chr23:4167603-4167638
Coord C2 exon
chr23:4169490-4169534
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATAAAACTGCCTTTTTGCAGGGG
3' ss Score
7.38
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAGAGCCAGGAGCGGTGGGTCCCCCAGGAGAACCAGGATACCTGGGTTTACCTGGAATTCAAGGGAAAAAG
Seq A exon
GGGGACAAAGGAAATCAAGGTGAAAGGGGCATTCAG
Seq C2 exon
GGTCAAAAGGGAGAAAATGGAAGACCAGGGATTCCAGGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046193-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.462 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGGAGAACCAGGATAC
R:
CTGGAATCCTGGAATCCCTG
Band lengths:
96-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]