GgaEX1016511 @ galGal3
Exon Skipping
Gene
ENSGALG00000016292 | COL21A1
Description
NA
Coordinates
chr3:90085627-90091154:+
Coord C1 exon
chr3:90085627-90085698
Coord A exon
chr3:90090386-90090421
Coord C2 exon
chr3:90091110-90091154
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGAATATTTTTACAGGGG
3' ss Score
7.25
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGAGAACCAGGAGGACCGGGTGCCCCAGGTGAACCAGGCTATCCAGGCATTCCCGGTACCCAAGGTATAAAG
Seq A exon
GGGGACAAAGGAAGCCAGGGTGAAAGTGGTATCCAG
Seq C2 exon
GGACGAAAAGGAGAAAAAGGAAGACAAGGAAATCCGGGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016292-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.9=100),PF0139113=Collagen=PU(32.4=95.8)
A:
PF0139113=Collagen=PD(1.3=8.3),PF0139113=Collagen=FE(15.5=100)
C2:
PF0139113=Collagen=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCAGGAGGACCGG
R:
AGCCCGGATTTCCTTGTCTTC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]