BtaEX6096819 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7302660-7303475:-
Coord C1 exon
chr23:7303431-7303475
Coord A exon
chr23:7303113-7303166
Coord C2 exon
chr23:7302660-7302767
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCGCCCCGTATTTCTCAGGGC
3' ss Score
9.94
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGCGTGGATGGAATTCGGGGTCTGAAGGGTCACAAGGGTGAAAAG
Seq A exon
GGCGAGGATGGCTTTCCCGGCTTCAAAGGGGACATGGGTGTGAAAGGCGACAGG
Seq C2 exon
GGCGAGGTCGGAGTCCCCGGTTCCAGGGGCGAGGATGGTCCTGAGGGGCCGAAGGGGCGCACTGGACCCACGGGGGACCCTGGGCCCCCGGGGCTCATGGGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'31-31,'31-30,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCGGGGTCTGAAGGGTCA
R:
CTTCTCGCCCATGAGCCCC
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]