GgaEX1016832 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8207660-8210267:+
Coord C1 exon
chr17:8207660-8207704
Coord A exon
chr17:8208774-8208827
Coord C2 exon
chr17:8210160-8210267
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCTCTGCTGTTTAGGGT
3' ss Score
9.89
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GGAGCGGATGGTGTTCGTGGGTTGAAGGGCACCAAAGGTGAAAAG
Seq A exon
GGTGAAGATGGCTTCCCTGGCTTCAAAGGGGATATGGGCATCAAGGGAGACCGG
Seq C2 exon
GGTGAAATCGGACCTCCGGGCCCCAGGGGTGAGGATGGCCCTGAAGGTCCCAAAGGTCGCTCGGGTCCCAACGGAGACCCCGGTCCTCTCGGTCCTGCTGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(20.3=100)
A:
PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(12.0=50.0)
C2:
PF0139113=Collagen=FE(55.6=100),PF0139113=Collagen=PU(38.6=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGTTCGTGGGTTGAAGG
R:
CTTCTCTCCAGCAGGACCGAG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]