BtaEX6047761 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106906513-106909243:-
Coord C1 exon
chr11:106909199-106909243
Coord A exon
chr11:106908559-106908612
Coord C2 exon
chr11:106906513-106906536
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGGTCCCCCTTCAGGGT
3' ss Score
10.97
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGGGCAGACGGCATCCGAGGTCTGAAGGGCACCAAGGGTGAGAAG
Seq A exon
GGTGAAGATGGCTTCCCAGGCTTCAAAGGAGACATGGGCATCAAGGGCGATCGG
Seq C2 exon
GGGGAGATCGGCCCACCTGGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'34-40,'34-39,35-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=FE(10.1=100),PF0139113=Collagen=PU(6.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGAGGTCTGAAGGGCA
R:
ACCAGGTGGGCCGATCTC
Band lengths:
55-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]