BtaEX6096855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000602 | RXRB
Description
Bos taurus retinoid X receptor, beta (RXRB), mRNA. [Source:RefSeq mRNA;Acc:NM_001083640]
Coordinates
chr23:7324980-7326944:-
Coord C1 exon
chr23:7326534-7326944
Coord A exon
chr23:7325636-7325883
Coord C2 exon
chr23:7324980-7325136
Length
248 bp
Sequences
Splice sites
3' ss Seq
TACCCTCCCTCGCCCCCCAGACT
3' ss Score
10.35
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCAAGATGGCTGCCACATTGGCGCTGTCATTTTGGTACAGGGCCGGGCGAAGCGCTTAGTTTGACCTGGTTGAAGCCAGAGTCGTTTTCTCTGGGGCTTCCTCGTGCTCGGCTCGTCCCCCCGAGCGGTCCTCGGGAATCCCTGGTGCCGCTCGGCGTCCTTACACTCTGCCGGGAGTCATGTCTTGGGCTGCGCGCCCGCCCTTCCTCCCCCAGCGGCATGCCGCAGGGCAGTGTGGGCCGGTGGGGGTGCGAAAAGAAATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGGCGGCCCTGGCTGGATCCCGCGGCGGCGGCGGCGGCGGCGGCGGCCGGAGGACAGCAGGCCCCGGAGCCGGAGCCGGGGGAGGCTGGACGGGACGGGATGGGCGACAGCGGGCGGG
Seq A exon
ACTCCCGGAGCCCAGACAGTTCCTCCCCAAATCCCCTTCCCCAGGGGGCCGCTCCCCCTTCTCCTCCAGGACCACCCTTGCCCCCTTCAGCAGCTGCGTCCCTTGGAGGTTCTGGGGCTCCACCACCACCCTCGATGCCACCCCCACCACTGGGCTCCCCCTTCCCAGTTATCAGCTCTTCCATGGGGTCCCCCGGCCTGCCCCCTCCAGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGTCCCCAG
Seq C2 exon
ATTAACTCAACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGGCTATGTGCAATCTGCGGGGACCGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000602-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.736
Domain overlap (PFAM):
C1:
NO
A:
PF118253=Nuc_recep-AF1=PU(65.8=90.4)
C2:
PF118253=Nuc_recep-AF1=PD(32.5=69.8),PF0010513=zf-C4=PU(15.7=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGGTGCGAAAAGAAAT
R:
GATTGCACATAGCCGTTTGCC
Band lengths:
308-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]