MmuEX0040828 @ mm9
Exon Skipping
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34168757-34170656:+
Coord C1 exon
chr17:34168757-34169168
Coord A exon
chr17:34169772-34169989
Coord C2 exon
chr17:34170500-34170656
Length
218 bp
Sequences
Splice sites
3' ss Seq
TGTACGTACCCACTTCTCAGATT
3' ss Score
7.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTACAAAGATGGCGGCCGCGCCGGTGCTGTCATCTCAGTGCCGAGCCGAGCGCGGCTCTTGAGTCGCGCTGCCACAGGCCGCGGCCTGCTCGCCTCCGCGGCTTCGTCGCGGCCCCCGAGTCCCCCGCTGTCCCCCCTGCGCGTCCCTGGCGCCTCTCCGGCTTCCCCGCCCTCGGCCCGGGCGTCATGTCTTGGGCCACTCGTCCGCCCTTCCTCCCGCCGCGGCATGCCGCGGGGCAGTGTGGGCCGGTGGGGGTGAGAAAAGAGATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGGCGGCCCTGGCTGGATCCCGCGGCGGCGGCGGCGGCGGCCGGAGAGCAGCAAGCCCTGGAGCCGGAGCCGGGGGAGGCTGGCCGGGACGGGATGGGCGACAGCGGGCGGG
Seq A exon
ATTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTTCTCAGGGGATCCGTCCGTCTTCTCCTCCTGGCCCACCTCTTACCCCTTCAGCACCTCCACCTCCAATGCCACCCCCGCCACTGGGCTCCCCCTTCCCAGTCATCAGTTCTTCCATGGGGTCCCCTGGTCTGCCCCCTCCGGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGCCCTCAG
Seq C2 exon
ATCAACTCCACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCGGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGTCCTGGGGCTGGCAAACGGCTCTGTGCAATCTGCGGGGACCGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-'0-3,'0-2,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.805 C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
PF118253=Nuc_recep-AF1=PU(62.9=90.4)
C2:
PF118253=Nuc_recep-AF1=PD(35.2=69.8),PF0010513=zf-C4=PU(15.7=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGTCTTGGGCCACTC
R:
GGTGGCTTCACATCTTCAGGG
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: