RnoEX0077634 @ rn6
Exon Skipping
Gene
ENSRNOG00000000464 | Rxrb
Description
retinoid X receptor beta [Source:RGD Symbol;Acc:3611]
Coordinates
chr20:3823042-3824978:+
Coord C1 exon
chr20:3823042-3823407
Coord A exon
chr20:3824014-3824231
Coord C2 exon
chr20:3824822-3824978
Length
218 bp
Sequences
Splice sites
3' ss Seq
CTTATGTACCCACTTCTCAGATT
3' ss Score
6.77
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCGAGCCGAGCGCGGCGCTTGAGTCGCGCTGCCACAGGCCGGAGCCCGCCCTCCTCGGCGGCTTCCTCGCGCTCCCTGAGTCCCCCGCTCTGCCCCCTGCGCGTCCCTGGCGCCTCTCCGGCTCCCCCACCCTCGGCCCCGGCGTCATGTCTTGGGCCACTCGTCCGCCCTTCCTCCCGCCGCGGCATGCCGCGGGGCAGTGTGGGCCGGTGGGGGTGAGAAAAGAGATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGGCGGCCCTGGCTGGATCCCGCGGCGGCGGCGGCCGGAGAGCAGCAAACCCTGGAGCCGGAGCCGGGGGAGGCTGGCCGGGACGGGATGGGCGACAGCGGGCGGG
Seq A exon
ATTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTTCCCAGGGGATCCCTCCCTCTTCTCCTCCCGGTCCACCTCACACCCCTTCAGCACCTCCACCTCCAATGCCACCCCCTCCACTGGGCTCCCCCTTCCCAGTCATCAGTTCTTCCATGGGGTCTCCTGGCTTGCCCCCTCCGGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGCCCTCAG
Seq C2 exon
ATTAACTCCACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGACTTTGTGCAATCTGCGGGGACCGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000464-'0-4,'0-1,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.763
Domain overlap (PFAM):
C1:
NO
A:
PF118253=Nuc_recep-AF1=PU(62.9=90.4)
C2:
PF118253=Nuc_recep-AF1=PD(35.2=69.8),PF0010513=zf-C4=PU(15.7=20.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGGGGTGAGAAAAGAGA
R:
TTGCACAAAGTCGTTTGCCAG
Band lengths:
295-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]