BtaEX6097364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12657634-12659559:+
Coord C1 exon
chr23:12657634-12657696
Coord A exon
chr23:12658330-12658430
Coord C2 exon
chr23:12659422-12659559
Length
101 bp
Sequences
Splice sites
3' ss Seq
AATTTAAAAACCTTTTGTAGGCC
3' ss Score
4.86
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAAGGACCCATGGTTCCAAATATACCACCCCAAGAAGCTAGCAACAGGCTACAGATCTTTCAG
Seq A exon
GCCAATTTTGATGATCTATGGAGGAAATTCGTTACATATTCATCTGGAGAACAACTTTTTGGGTTGCCTGTGACTGACTATGAGGTTTTACACAAAACTAG
Seq C2 exon
AAAGGAGCTCAACTTGCTGCAGAAGCTGTATGGACTGTACGATACTGTGATGGGCAATATTAGTGGCTATTATGAGATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTTCTGGAGTTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(1.5=17.6)
C2:
PF083938=DHC_N2=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACCCATGGTTCCAAAT
R:
ACTCCAGAAGTTCTGCATTAATTTT
Band lengths:
191-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]