HsaEX6047057 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38802355-38810281:+
Coord C1 exon
chr6:38802355-38802417
Coord A exon
chr6:38805718-38805818
Coord C2 exon
chr6:38810144-38810281
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAACCTTTGTTACAGGCC
3' ss Score
6.9
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGGACCTATGGTTCCAAATATACCACCCCAAGAAGCTAGCAACAGGCTACAGATATTTCAG
Seq A exon
GCCAGTTTCGATGATCTGTGGAGGAAATTTGTTACGTATTCATCTGGTGAACAACTTTTTGGATTGCCTGTGACTGATTATGAGGTTTTACACAAAACCAG
Seq C2 exon
AAAAGAACTCAACTTGCTGCAGAAGCTGTATGGATTGTATGACACCGTAATGAGCAGTATTAGTGGTTATTATGAAATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTGCTGGAATTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'33-36,'33-35,34-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(1.5=17.6)
C2:
PF083938=DHC_N2=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTATGGTTCCAAATATACCACC
R:
TTTGAAATTCCAGCAGTTCTGCA
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)