RnoEX6062081 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9394224-9399059:+
Coord C1 exon
chr20:9394224-9394286
Coord A exon
chr20:9397073-9397173
Coord C2 exon
chr20:9398922-9399059
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCAAAAAATCTTTGTTACAGGCC
3' ss Score
7.39
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAAGGACCCATGGTACCAAATATTCCACCCCAAGAGGCTAGCAACAGGCTGCAGATATTCCAG
Seq A exon
GCCAATTTCGATGATCTATGGAGGAAATTTGTCACATATTCAGCCGGGGAACAACTTTTTGGATTACCCGTGACTGACTATGAGGTCTTACACAAGACTAG
Seq C2 exon
AAAAGAGCTCAACTTGCTTCAGAAGCTGTATGGCTTGTACGACACCGTCATGGGCAGCATCAGTGGCTATTATGAGATCCTCTGGGGAGATGTGGACATTGAAAAGATCAATGCCGAGCTGCTAGAATTCCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'57-61,'57-60,58-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(1.5=17.6)
C2:
PF083938=DHC_N2=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACCCATGGTACCAAAT
R:
CTGGAATTCTAGCAGCTCGGC
Band lengths:
196-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]