BtaEX6097383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12612148-12624995:+
Coord C1 exon
chr23:12612148-12612264
Coord A exon
chr23:12613067-12613186
Coord C2 exon
chr23:12624860-12624995
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATATGTTTTCTCATTGGTAGATC
3' ss Score
7.69
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGAAGCTGTGTTAAGACAAGGGCTCACAATATTGACATGGTCATCTTTAACACTAGAAAGCTTTTTTCAGGAAGTTGACTCAGTTTTGGGTATGTTCAACCAACTCTTAAAGAAG
Seq A exon
ATCAATGACTTGTGTGAAATGCATATTGATGCAGTTCTAAAGGAGATAGCCAAAACATTGTTAATTTCCCTGCCTGAAACCGGTGCTACCAAAGTAGAAGATATGTTGACACTCAATGAG
Seq C2 exon
ACATACACAAAAGAATGGGCTGAGGTTCTAAACCACAAAAGTAAGCATGTGGAAGAAGCTGTCAAAGAACTTATATCAATATTTGAGACTATTTATGAAGTTAAGTACAGTGGGAAAGGAGCAAGACACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(4.1=59.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGTTAAGACAAGGGCT
R:
AGTGTCTTGCTCCTTTCCCAC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]