GgaEX6029609 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30700886-30703687:-
Coord C1 exon
chr3:30703571-30703687
Coord A exon
chr3:30701802-30701921
Coord C2 exon
chr3:30700886-30701027
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATATGATCTTCTCCTTCTAGGTT
3' ss Score
11.16
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATGGAAGCTGTGCTGAGGCAAGGACTTACTTTGTTGACTTGGTCATCAGTTACACTGGACAGTTTCTTTCAAGAAGCTGATGAGGTTCTGTGTATGTTTAAACAGTTTTTGAAAAAG
Seq A exon
GTTAATGATATATGTGAAGTACGGATTGATTTAATATTAAAAGAAATATCAAATACTCTTTTAATTGTCTTACCAGTAGATGATCCTATCAAAGTAGACGATATGTTGACCTCTAATGAG
Seq C2 exon
ATTTATACTAAAGAATGTGCTGAATTGTTGAACCACAAAAGTATGAATATTGAAGATGCTGTTCAGGACCTAATCTCTGTATTTGAAAATTATTATGAAATTAAGCATTCTAAGAAAGCCTCAAAAAAGGAGGCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(4.1=59.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGCTGTGCTGAGGC
R:
TTTTGAGGCTTTCTTAGAATGCTT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]