MmuEX0015089 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30677087-30694061:+
Coord C1 exon
chr17:30677087-30677274
Coord A exon
chr17:30686383-30686502
Coord C2 exon
chr17:30693949-30694061
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGTCTCGTGGGTAGGTC
3' ss Score
8.73
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTTTGCAAGCCACGCTGTTTGTGCGACATCCGGAAACGGGGAAGTTGCTGGTTAACTTTGATCCTAAGATTCTGGAAGTTGTGCGGGAAACGAAATGCATGATAAAGATGAAGCTGGACGTTCCGGAACAAGCAAAGAATTTGCTGAAACTGGAGAGCAAACTGAAGGCAGACAAGCTGTATCTGCAG
Seq A exon
GTCAATGACCTGTGTGAGATGCACATCGACACAGTTCTGAAGGAGATTGCCAAGACATTGCTAATCTCCTTGTCAGATAGCGGCACCACCAAAGTAGAAGACATGCTGACCCTCAACGAG
Seq C2 exon
AGCAGAGGAAGCGCGTTGTCTTTGGAAGTGAGGCAGAAGAGACCGAAGGCCTCGACTTTGAATCGACGACGATGGAGGTCGACACCAATGATAAAGAAGATGAATTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.1=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000170651fB8922
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGGAAGTTGCTGGTTAAC
R:
CATTGGTGTCGACCTCCATCG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types