BtaEX6097866 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17809337-17810741:+
Coord C1 exon
chr23:17809337-17809455
Coord A exon
chr23:17810254-17810387
Coord C2 exon
chr23:17810588-17810741
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCCACCTTGCTACCCCCAGATC
3' ss Score
8.61
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGACTGCTGGCTGCTGGCTGCCATTGGCTCTCTCACTGCGTACCCCAAACTGCTGTCCCGTGTGGTGCCCAAGGGGCAGAGCTTCAAGAAGAACTATGCTGGCATCTTCCATTTTCAG
Seq A exon
ATCTGGCAGTTTGGGGAGTGGATGGACGTTGTGGTGGATGACCGGCTGCCCACAAAGAATGGCAAGCTGGTGTTTGTGCACTCAGCGGAGCGCACTGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATATGCCAA
Seq C2 exon
GCTGAACGGATCGTATGAAGCTCTGTCGGGGGGCAACACGGTGGAGGGCTTTGAGGACTTCACAGGGGGCGTGACGCAGAGCTTCCAACTCCAGAATCCCCCTAGGAACCTGCAGAGGATTCTTAGGAAGGCCGTGGAGCGATCTTCCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(12.9=100)
A:
PF0064816=Peptidase_C2=FE(14.6=100)
C2:
PF0064816=Peptidase_C2=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGCTCTCTCACTGCGTA
R:
AGGGAAGATCGCTCCACGG
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]