GgaEX1012774 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29688131-29688771:-
Coord C1 exon
chr3:29688653-29688771
Coord A exon
chr3:29688407-29688540
Coord C2 exon
chr3:29688131-29688299
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTTCTTCCCCCCAGATC
3' ss Score
11.91
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGACTGCTGGCTGCTGGCTGCCATCGGCTCCCTCACTCTCAACGAGGAACTCCTGCACCGTGTGGTGCCCCACGGGCAGAGCTTCCAGGAGGACTACGCTGGCATCTTCCACTTCCAG
Seq A exon
ATCTGGCAGTTTGGTGAGTGGGTGGACGTGGTGGTGGACGACCTGCTGCCCACCAAGGACGGGGAGCTCCTGTTTGTGCATTCAGCAGAGTGCACAGAGTTCTGGAGTGCTCTGCTGGAGAAGGCTTACGCCAA
Seq C2 exon
GCTGAACGGCTGCTACGAGTCGCTCTCAGGGGGCAGCACCACTGAGGGCTTTGAGGATTTCACCGGCGGCGTAGCGGAGATGTATGACCTCAAGCGGGCACCGCGCAACATGGGCCACATCATCCGCAAGGCACTGGAGAGGGGGTCCCTGCTGGGCTGCTCCATCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGCTCCCTCACTCTCAA
R:
CCCCCTCTCCAGTGCCTTG
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]