BtaEX6098182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26992976-26994732:+
Coord C1 exon
chr23:26992976-26993499
Coord A exon
chr23:26994075-26994458
Coord C2 exon
chr23:26994557-26994732
Length
384 bp
Sequences
Splice sites
3' ss Seq
GCCATCTCCTCACCCCACAGTCC
3' ss Score
9.46
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CACAGAGCCCCCTCCTGTGGTCTCCATCACTGCCACCATGGTGGCCTGTGTCTGCCCTCCCCCAAGCCTGGACTCCCACCCCGCTGCGCCTGCCTCAATGGTTATGGGGGTCCGGATTGCCTGACCCCACCAGCTCCTTCAGGCTGTGGCCCTCCTTCTCCATGCCTACACAATGGCAGCTGCTCAGAGACCCCCGGGCTGGGGGGCCCAGGCTTTCGCTGTTCCTGCCCTGCCAGCTCTCCAGGGCCCCGGTGTCAGAGGCCCGGAGTCAAGGGATGCGAGGGCAGAAGTGGAGATGGGGCCTGTGATGCTGGCTGCAGTGGCCCAGGAGGAAACTGGGATGGGGGGGACTGCTCCCTGGGGGTCCCAGACCCCTGGAAGGGCTGCCCCTCCCACTCCCGGTGCTGGCTTCTTTTCCGGGACGGGCAGTGCCACCCACAGTGTGACTCTGAAGAGTGTTTGTTTGATGGCTACGACTGTGAGACTCCTCCAGCCTGCAT
Seq A exon
TCCAGCCTATGACCAGTACTGCCGCGATCACTTCCACAATGGACACTGCGAGAAGGGCTGCAACACGGCAGAATGTGGCTGGGACGGGGGAGACTGCAGGCCGGAAGATGGAAATTCAGAGTGGGGGCCCTCCCTGGCCTTGTTGGTGGTGCTGAGCCCCTCAACCCTGGACCAGCAGCTGCTCGCCCTGGCCCGGGTGCTGTCCCTGACTCTGAGGGTAGGGCTCTGGGTGAGGAAGGACAGTGAAGGCAAGGACATGGTGTACCCCTATCCTGGAGCCCAAGCAGAAGAGGAGCTAGGAGGAACCCCAGACCCCTCTCAGCAGGAGAGAGCAGCCCCCCAAACAGAGCCTACAGGCAAGGAGACAGATTCCCTGAGCACTGG
Seq C2 exon
GTTTGTGGTGGTGATGGGTGTGGACTTGTCCCACTGTGGCCCCGAGCGCCCTGCATCCCGCTGCCCCTGGGACCCTGGGCTCCTACTCCGCTTCCTTGCTGCAATGGCTGCAGTGGGGGCCCTGGAACCCCTACTGCCAGGACCCCTGCTGGCTGCCCACCCTCGTGCAGGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'21-29,'21-28,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.302 C2=0.200
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(14.7=2.9),PF0000822=EGF=WD(100=20.6),PF0006612=Notch=WD(100=22.9),PF0006612=Notch=WD(100=21.7),PF0006612=Notch=PU(12.8=2.9)
A:
PF0006612=Notch=PD(84.6=25.6),PF068168=NOD=WD(100=39.5),PF076847=NODP=PU(4.6=2.3)
C2:
PF076847=NODP=FE(90.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACAATGGCAGCTGCTCAG
R:
CACACCCATCACCACCACAAA
Band lengths:
356-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]