MmuEX0032065 @ mm10
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
notch 4 [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34582399-34584004:+
Coord C1 exon
chr17:34582399-34582922
Coord A exon
chr17:34583350-34583733
Coord C2 exon
chr17:34583829-34584004
Length
384 bp
Sequences
Splice sites
3' ss Seq
CATGCCTCCTTTGCCCACAGCCC
3' ss Score
11.04
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CACAAAGCCCTTTCCTGCGGCATCCATCACTGCCACAATGGAGGCCTATGTCTGCCCTCCCCTAAGCCAGGGTCACCACCACTCTGTGCCTGCCTCAGTGGTTTTGGGGGCCCTGACTGTCTGACACCTCCAGCTCCACCGGGCTGCGGTCCCCCCTCACCCTGCCTGCACAATGGTACCTGCACTGAGACCCCTGGGTTGGGCAACCCGGGCTTTCAATGCACCTGCCCTCCTGACTCTCCAGGGCCCCGGTGTCAAAGGCCAGGGGCAAGTGGGTGTGAGGGCCGAGGTGGTGATGGGACCTGCGATGCTGGCTGCAGTGGCCCAGGAGGAGACTGGGATGGAGGGGACTGTTCCCTGGGGGTCCCAGACCCCTGGAAGGGCTGTCCCCCGCATTCCCAGTGCTGGCTTCTGTTCCGGGACGGACGGTGTCACCCGCAGTGTGACTCTGAGGAGTGTCTCTTTGATGGCTACGACTGTGAAATCCCTCTAACCTGCAT
Seq A exon
CCCAGCCTATGACCAGTACTGCCGAGATCACTTCCACAACGGGCACTGTGAGAAAGGCTGCAATAACGCTGAATGTGGCTGGGACGGGGGAGACTGCAGACCAGAAGGGGAAGACTCAGAGGGGAGGCCCTCCCTGGCCCTGCTGGTGGTGCTGAGGCCCCCAGCCCTGGATCAGCAGCTGCTTGCCCTGGCACGAGTGCTGTCCCTGACTCTGAGGGTCGGTCTCTGGGTGAGGAAGGACAGTGAAGGCAGGAACATGGTGTTCCCCTATCCTGGGACCCGGGCCAAAGAGGAGCTGAGTGGAGCTAGGGATTCCTCTTCATGGGAAAGACAAGCCCCTCCCACTCAGCCCCTGGGCAAGGAGACAGAGTCTCTTGGTGCAGG
Seq C2 exon
GTTTGTGGTAGTGATGGGAGTGGATCTGTCCCGCTGTGGTCCGGAACATCCTGCGTCCCGCTGCCCCTGGGACTCTGGACTCCTGCTGCGCTTCCTTGCAGCAATGGCAGCAGTGGGAGCTCTGGAGCCCCTGCTGCCTGGACCCTTGCTGGCGGCTCACCCTCAAGCAGGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'29-39,'29-36,32-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.126
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(14.7=2.9),PF0000822=EGF=WD(100=20.6),PF0006612=Notch=WD(100=22.9),PF0006612=Notch=WD(100=21.7),PF0006612=Notch=PU(12.8=2.9)
A:
PF0006612=Notch=PD(84.6=25.6),PF068168=NOD=WD(100=40.3),PF076847=NODP=PU(3.1=1.6)
C2:
PF076847=NODP=FE(92.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGGTACCTGCACTGA
R:
TCCACTCCCATCACTACCACA
Band lengths:
357-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types