BtaEX6098188 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26985190-26986126:+
Coord C1 exon
chr23:26985190-26985307
Coord A exon
chr23:26985538-26985625
Coord C2 exon
chr23:26985973-26986126
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTCTCATCCAGCCC
3' ss Score
9.76
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CACTGTGCCTCAATGGGGGCACCTGTGTGAACAAGCCGGGCACCTTCTCCTGCCTCTGCACCCCAGGCTTCCAGGGCCCACGCTGCGAGGGAAGGACCCGTCCCAGCTGCGCAGACAG
Seq A exon
CCCCTGTAGGAACATGGCAACCTGCCAAGACAGCCCTCAGGGTCCCCGCTGCCTCTGTCCCCCTGGCTACACAGGAGGCAGCTGTCAG
Seq C2 exon
ACGCTGATGGACTTATGCGCCCAGAAGCCCTGCCCACAAAATTCCCACTGCCTCCAGACTGGGCCCTCCTTCCAGTGCCTGTGCCTCCAGGGATGGACTGGGCCTCTCTGCAACCTGCCGCTGTCCTCCTGCCAGAAGGTTGCTCTGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=67.5),PF0000822=EGF=PU(9.7=7.5)
A:
PF0000822=EGF=PD(87.1=90.0)
C2:
PF0000822=EGF=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGCCTCAATGGGGG
R:
AGTGGGAATTTTGTGGGCAGG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]