RnoEX6061539 @ rn6
Exon Skipping
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4341961-4343075:+
Coord C1 exon
chr20:4341961-4342078
Coord A exon
chr20:4342298-4342385
Coord C2 exon
chr20:4342925-4343075
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTTGTCTTGTCCAGCCC
3' ss Score
8.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTCGTGTCTCAACGGGGGTACCTGCATGAGCAAACCTGGCACTTTCTTCTGCCACTGTGCCACTGGCTTCCAGGGGCTGCACTGTGAGAAGAAGATTCACCCCAGCTGTGCAGACAA
Seq A exon
CCCCTGCAGGAACAAGGCAACCTGCCAAGACACACCTCGAGGGGCCCGCTGCCTCTGCAGCCCTGGCTACACAGGAAGCAGCTGCCAG
Seq C2 exon
ACTCTGATAGACTTGTGTGCCCGGAAGCCCTGTCCACACACTGCCCGATGCCTCCAGAGTGGGCCCTCCTTCCACTGCCTGTGCCACCAGGGATGGACAGGGTCTCTCTGTGACCTCCCACTGTCCTGCCAGGCGGCCGCGATGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442-'14-24,'14-23,15-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=67.5),PF0000822=EGF=PU(9.7=7.5)
A:
PF0000822=EGF=PD(87.1=90.0)
C2:
PF0000822=EGF=WD(100=60.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCACTGTGAGAAGAAG
R:
ACAGTGGGAGGTCACAGAGAG
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]