MmuEX6077110 @ mm9
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
Notch gene homolog 4 (Drosophila) [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34713354-34714513:+
Coord C1 exon
chr17:34713354-34713471
Coord A exon
chr17:34713714-34713801
Coord C2 exon
chr17:34714363-34714513
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTTGTCTTGTCCAGCCC
3' ss Score
8.32
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTCGTGCCTCAATGGGGGTACCTGTGTGAACAAGCCTGGCACTTTCTTCTGCCTCTGTGCCACTGGCTTCCAGGGGCTGCACTGTGAGGAGAAGACTAACCCCAGCTGTGCAGACAG
Seq A exon
CCCCTGCAGGAACAAGGCAACCTGCCAAGACACACCTCGAGGGGCCCGCTGCCTCTGCAGCCCTGGCTATACAGGAAGCAGCTGCCAG
Seq C2 exon
ACTCTGATAGACTTGTGTGCCCGGAAGCCCTGTCCACACACTGCTCGATGCCTCCAGAGTGGGCCCTCGTTCCAGTGCCTGTGCCTCCAGGGATGGACAGGGGCTCTCTGTGACTTCCCACTGTCCTGCCAGAAGGCCGCGATGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=67.5),PF0000822=EGF=PU(9.7=7.5)
A:
PF0000822=EGF=PD(87.1=90.0)
C2:
PF0000822=EGF=WD(100=60.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACTGTGAGGAGAAGAC
R:
AGGACAGTGGGAAGTCACAGA
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: