BtaEX6098226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004436 | PPT2
Description
Bos taurus palmitoyl-protein thioesterase 2 (PPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035318]
Coordinates
chr23:27029141-27033333:-
Coord C1 exon
chr23:27033250-27033333
Coord A exon
chr23:27033045-27033129
Coord C2 exon
chr23:27029141-27029195
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTCTTATTCCCACCCTGTAGCTT
3' ss Score
7.53
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACCCTCACCATGATGACTTGTACCTCAATGCCAGCAGCTTCCTGGCCCTGATCAATGGGGAAAGAGACCATCCCAATGCCACTG
Seq A exon
CTTGGCGGAAGAACTTTCTGCGTTTGGGCCGCCTGGTGCTGATTGGGGGCCCTGATGATGGTGTCATTACTCCCTGGCAGTCCAG
Seq C2 exon
CTTCTTTGGTTTCTATGATGCAAATGAGACAGTCTTGGAGATGGAGAAGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004436-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(10.5=100)
A:
PF0208910=Palm_thioest=FE(10.5=100)
C2:
PF0208910=Palm_thioest=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCACCATGATGACTTGT
R:
TGCTTCTCCATCTCCAAGACTG
Band lengths:
135-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]