MmuEX6077146 @ mm9
Exon Skipping
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34754609-34760059:-
Coord C1 exon
chr17:34759976-34760059
Coord A exon
chr17:34759796-34759880
Coord C2 exon
chr17:34754609-34754663
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCTGTCTCTACAGCAT
3' ss Score
11.4
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATCCTCACCACGATGACTTGTACCTCAATGCCAGCAGCTTTCTGGCCCTCATCAATGGGGAAAGAGACCATCCCAATGCCACTG
Seq A exon
CATGGCGGAAGAACTTCCTTCGCGTGGGCCGTCTGGTGCTGATTGGGGGTCCTGATGATGGCGTTATCACTCCCTGGCAATCTAG
Seq C2 exon
CTTCTTTGGTTTCTATGATGCCAATGAGACAGTTCTGGAGATGGAGGAGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(10.6=100)
A:
PF0208910=Palm_thioest=PD(13.3=93.1)
C2:
PF0208910=Palm_thioest=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCACGATGACTTGTACC
R:
GCTGCTCCTCCATCTCCAGAA
Band lengths:
135-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: