DreEX0057933 @ danRer10
Exon Skipping
Gene
ENSDARG00000104542 | ppt2
Description
palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
Coordinates
chr19:19274471-19281131:-
Coord C1 exon
chr19:19281024-19281131
Coord A exon
chr19:19279498-19279582
Coord C2 exon
chr19:19274471-19275226
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTACTTGAACAGCTT
3' ss Score
7.83
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
Exon sequences
Seq C1 exon
ACACAGACTATTTGAAGTACCTGTTCCCTCAGTTTGTCAAATCCAACTTGTTTCATGTATGCTATACTGCAGTGGGCCAGAAAATATCAATCTGTAACTACTGGAATG
Seq A exon
CTTGGAAACAAAACTTTCTGCGTATTAAGAAGCTAGTACTGATTGGCGGCCCTGATGATGGGGTAATCACACCATGGCAGTCAAG
Seq C2 exon
GTGTTTCTGATGGACTTGTTTGGACTGAAGACGTTGTCTGCTCGAGGGGATCTGGCTCTGTGTTCAGTGGAAGGCGTTGCGCATATCTTCTGGCACTCCAATGAAACGGTGTATAAAACCTGCATTGAAAAATGGCTTACATAGATTCTGACACAGTACATGTCTTTTTAATTTTTTAACTCATTCATACAAATGTTTGCACTTTTTTAACAGTATTTTAGCGCATTGCATCAGAACAGACATTTCTGTTACAGTGATTCTGCATCCATGGAAAACCCATAGTAGAGATGCAACATGTATTGTGATTACATGTTTACATTTATAAAAGTAAACTAAACATAATGAACAGCCATCAGTGCCTGAGGGAAACATTCTTCATTTTACAAAAGGAACTGGATCTTAGCTGCTGTTTTACTTTGCTTTTGATGTTTTTATTTCTATAATGTTTTATGTGGATTGTGCACTGCAGTAATATTTATGCCTTTCATTCAAAGGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104542_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(13.6=100)
A:
PF0208910=Palm_thioest=FE(10.6=100),PF121423=PPO1_DWL=PU(18.2=20.7)
C2:
PF0208910=Palm_thioest=PD(15.8=87.5),PF121423=PPO1_DWL=PD(21.2=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCCCTCAGTTTGTCA
R:
AACGCCTTCCACTGAACACAG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]